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MOFAFlex basilisk Python environment

dot-mofaflex_env.Rd

Defines the managed Python environment used by MofaflexR for all Python operations. The environment is created on first use by basilisk::BasiliskEnvironment() and reused afterward; the user does not need to install Python manually.

The environment includes:

  • numpy – used for zero-copy array views of R vectors

  • scipy – provides scipy.sparse.csc_matrix

  • anndata – AnnData container

  • mofaflex – the MOFAFlex model-fitting library (installed via pip)

Usage

.mofaflex_env

Format

An object of class BasiliskEnvironment of length 1.

Value

A basilisk::BasiliskEnvironment object.

Examples

env <- mofaflex_basilisk_env()
#> Error in mofaflex_basilisk_env(): could not find function "mofaflex_basilisk_env"
class(env)
#> Error: object 'env' not found